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Abstract Food resources in the ocean are often found in low densities, and need to be concentrated for efficient consumption. This is done in part by oceanographic features transporting and locally concentrating plankton, creating a highly patchy resource. Lagrangian approaches applied to ocean dynamics can identify these transport features, linking Lagrangian transport and spatial ecology. However, little is known about how Lagrangian approaches perform in ageostrophic coastal flows. This study evaluates two Lagrangian Coherent Structure metrics against the distribution of phytoplankton; Finite Time Lyapunov Exponents (FTLE) and Relative Particle Density (RPD). FTLE and RPD are applied to High Frequency Radar (HFR) observed surface currents within a biological hotspot, Palmer Deep Canyon Antarctica. FTLE and RPD identify different transport patterns, with RPD mapping single particle trajectories and FTLE tracking relative motion of paired particles. Simultaneous measurements of circulation and phytoplankton were gathered through the integration of vessel and autonomous glider surveys within the HFR footprint. Results show FTLE better defined phytoplankton patches compared to RPD, with the strongest associations occurring in stratified conditions, suggesting that phytoplankton congregate along FTLE ridges in coastal flows. This quantified relationship between circulation and phytoplankton patches emphasizes the role of transport in the maintenance of coastal food webs.